NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211535_10000028

Scaffold Ga0211535_10000028


Overview

Basic Information
Taxon OID3300020461 Open in IMG/M
Scaffold IDGa0211535_10000028 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47850
Total Scaffold Genes115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (46.96%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5023Long. (o)37.9965Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0211535_1000002871F007770AGGMSGEGLSVSFRRTSMTQMSNQELLEEFQKIVYESRVTKHMKWYGQAHSVYMEEHGDEELQKWQQEGVAIKDTFRFCISVYESWYEDADLYESHSLQDSFVSLAREFAKDNWLHYYSEGFPSEWIETETIDGEKHWNHFVVKPDDKNIDKICKIWHNYGQQMVRAEQFGQTQKMKSSYWEQAKNDIKSIMEHKHEYSS
Ga0211535_1000002873F016956GGAMRSMNKIGQTWQAPQEVALAIIDLALTHIKKVELNPEVITEGDNFDYWNSYDVGDGTYVDYNIYCGDDLGEINVETGQFEYYDSIKWSWDVACYAVDPPTEENQYHQIDTDREQYLFSYNKKGKREVEFEK
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