Scaffold Ga0211535_10031812

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211535_10031812

Scaffold Ga0211535_10031812

Overview

Basic Information
Taxon OID	3300020461 Open in IMG/M
Scaffold ID	Ga0211535_10031812 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2184
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_064
Coordinates	Lat. (^o)	-29.5023	Long. (^o)	37.9965	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003028	Metagenome / Metatranscriptome	512	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211535_100318123	F003028	N/A	MKSAYITVVGSLPIRFDLEQAQKIGPVIASSNSNKSINFEYATVNSEVNLQDMLNSPNFNDTKLLVPEQLFKKYVFFDPVTCLPEFPGLVSYDIDPTKCSPQTLSIMLAVYNKPKIIFLLGYDISNPTELTRLKSVALANPDTKFMYICNPPRTYQLDDLANGFCDTYIKFQELIDKWQT

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