NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10011736

Scaffold Ga0211676_10011736


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10011736 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7441
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028183Metagenome / Metatranscriptome192N
F041247Metagenome / Metatranscriptome160N
F101216Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1001173611F101216N/AYIDMYFFAKGLVIPHHYHGVSQVAATYLNREHNIPFIDFYKKLFEYSRNGNGILNEEYKNHTNSLKQSLFEDKTWGRTIEGGDDFHIQDNGATASFLYKNIDKVHKEVINICKKKYNVDVSEACQFNKHIIDTYDRDEIEKQFDKNWYSWFYDNKPLVLINNIVSVTVYKYKDIVDHSKHLFWWGRKAKRCFLKSKEIML
Ga0211676_100117363F041247AGGAGVSDFYSVEAKTLKFDKKMIVDFYNTIDQTKWIHRQDKLPQYWPIDENNTFDRKHEFYKQLQQNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVEKVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDLKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211676_100117369F028183AGGLEETRSAPYCRELKSLWYDREYLLNHLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELIKLFTPAISFDTVLYTQTAIGGAPPHQDRNRPTALNFAIQGEFSDTSPQVFYDSFDRSTEKYRMTYEKNGLTKEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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