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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020463 Open in IMG/M |
| Scaffold ID | Ga0211676_10012187 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7259 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_094 | |||||||
| Coordinates | Lat. (o) | -32.7806 | Long. (o) | -87.0917 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037983 | Metagenome | 167 | N |
| F064200 | Metagenome | 129 | N |
| F096207 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211676_100121873 | F096207 | GGAG | MEIREVIINNKAIEKISYYAYNKDDSQMLAIKNKIHAVWNNHFIDRRGYKTYIEQCFLDSSDADIITIQTYYLEDDGTNLISILDDSQVPSDLKSGLSTDRADREFHNDTQTIEVEYSSASLPFSMPGNCGLRRQTHNLNPDYSDKGTYNVYVIGTVANVDALVKSENSSLSCTIPDGYTLAATDSFKLLYNSSDALQSCTLTQQDSFPYFDENLPDSVMHNLLLDKENIWYTFDITNETRTFEIPYVLGGVYPVEPLGANLNLMYITETYDSSFNNTNVQNVYVQGRLNDVYTWAKSLKSDITLPIPDNINKPDEVMFEDDGAYVVQESEFVGNDDMDYLIFEDATEGIDYNKCIILEQEILEDEDYFKFTFDSSDNLTSVKLIGHLQQTMTRSRKVRRQTQIEYNFKYQDAITNTGILATLVSDSARTLSVPKYDMNGFRYADD |
| Ga0211676_100121874 | F037983 | N/A | MFLHRVLIEDCKVLTRVWWFDPTKLSELKFTRKIHEEINKAFPNETYTYPVNHIYGMNHDDNCIIFHMCSPEIDEMKTLERKCELKAQNDVLLGKAYIRYMYNMENKNKYMEVVYRDKENFGEDNWSKSYRTGVPTTVQINTVSEFFDKDFNKIYESLLIHGYNNVQAVYDYADTLNKDLPKPIPVDKKLHKDDLFKFIFDMEGNLTKLQLFAHVDRVGIRDKGSNKTEYKADYADCINNLEETEIVIPEYDGNGNPIKSSQPKDNEEYILFPKARDKEYEKINFKDY |
| Ga0211676_100121875 | F064200 | N/A | MIFLHRVIVEDSEATWKIYWFNPGILSHRRYIKKIQEEIYKVFPNETYSWADPAHQCFGYHLKDNIIVTNVCGSNDENLHVNKRYVELKDQNEIYYNKDFVCFYYDLDNKKKWSEVYYKRDDNPEIITKTKLDDGLNVEWMSEYYNDEFEKTGQNLFITGKCEDIYKWIDKQNINIPKPFKNPIGMDMDDRPIVDNINTENAIKCEYNTEGNLVKLKFFGCVLRTKMKVKGEFSHLELSSGYISSINNSEQTEIVECKYDDYGNRVPSTIIKKIDDYIFFPKARENGEYERVLLKDM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |