NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10012464

Scaffold Ga0211676_10012464


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10012464 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7160
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F002602Metagenome / Metatranscriptome544Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_100124642F000464N/AMKLSQKNQSKFIQYRTYSHHDHDIDDLEDEFWPILGVLIAILAVWTGVIHFIDYMTLDVIPWWAEPFTIAPVVFLIVMKERYDSLNPLHWWPMLWGYHAKLPDEDRITIRPLDTERILQQHGGRCNVYIVDYETVKFRKKKDAVIFGLRYL
Ga0211676_100124643F002602AGGMKKSDQIKALAVAIEEKDNQIRMLLAQQGNHEVQISEYRQIVKELSNKLKLYEKKFGTVFKRSRDTADQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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