NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211676_10167796

Scaffold Ga0211676_10167796


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10167796 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_101677961F000720GAGGMTLQDDKIMRHKIPDRMMSTTFTLPIDNRKVVGIVNYVADDNGITPLALWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKDLAETLSQDNIIGQMVHYFQKNVEDIIMGNQPDKKQRMLSTDPYVSMMKE
Ga0211676_101677962F046006GGAGVKEYLTPLGKYTNLVLLLLILHFCITVMVVNFRYIDRLNTTIETMWHEIEQVKETNISLFQFIEEHGDDITGR
Ga0211676_101677963F090883GGAGGMVASLRIRRINNCRDMLTKVSCPRMRLMWKMNYEKLLKKYWEQEGERILNAAGQVH
Ga0211676_101677964F004988N/AVPKLVETICPRCDGNGYIRILPVVAGVFDKTTEMDCPMCEEEFMHMGMKVTTHNGYVMLPIEQTRLNIEGGRESKIKWSGETLPEVGK
Ga0211676_101677965F003020AGGAGMPDTSRFKSVSVSTSTHKQLESLAKSRFEVPVSIQKVIEFLLSKELKSKKRAKAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.