Scaffold Ga0211694_10004036

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211694_10004036

Scaffold Ga0211694_10004036

Overview

Basic Information
Taxon OID	3300020464 Open in IMG/M
Scaffold ID	Ga0211694_10004036 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5468
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_078
Coordinates	Lat. (^o)	-30.1495	Long. (^o)	-43.2486	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046080	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211694_100040369	F046080	N/A	MTRSTALGMLKVGNTGEEILSILDVIVADVESEQTINEIADLVFD

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