NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211713_10004253

Scaffold Ga0211713_10004253


Overview

Basic Information
Taxon OID3300020467 Open in IMG/M
Scaffold IDGa0211713_10004253 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7974
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.1569Long. (o)-129.5943Alt. (m)Depth (m)155
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036658Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0211713_100042536F036658N/AVILFTGCSITWGDDLENRLQDRFTKSYPNIAECGISNDMMVMKTIEYIDRTPNVDFVVAQFTVPRRSTYYDGKWKSITPWTKNVESKVYYKYLDSQELRMMNLWKNVYILDQYLQDIPHYFWRLGEYSEKDVTEDCIFKNLSPWSDMVTLYDLIGTPDGSPENYYTGHPNKKGHDLIAQHLQGVVPNSLYH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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