NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211577_10000163

Scaffold Ga0211577_10000163


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10000163 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67403
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (77.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041305Metagenome / Metatranscriptome160Y
F063096Metagenome / Metatranscriptome130Y
F088934Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_100001633F041305AGGMTIRAKIRNAAKLKGKANAQQEIVATTMKIQAGELSLGDLADVNTSGTSDGVMMIYDGTAGEYKVTTQIENQNLNIIGGTY
Ga0211577_1000016341F063096AGGMNITMNVIPVDIKEVKEFRAGYDLVMFEAGTDPMDGFVLLGFDEVSMISCANPRYAFIGAAA
Ga0211577_1000016367F088934GGAGMSYIQIERLKKDRNEALYYQRKLIKKGKNVLAYKMEKKIVHLNQYLDDMEAISKIH

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.