Scaffold Ga0211577

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10022333 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020469 Open in IMG/M

Scaffold ID

Ga0211577_10022333 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4925
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4925

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4068

Long. (^o)

-127.7432

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y
F098234	Metagenome / Metatranscriptome	104	Y
F106104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1002233310	F045198	N/A	MKLEAEHIEQIASYMADSLEDHLDIVFWDGIARVLDEFEIEYNDIGDISDEDCEAIVNETRILFSPKNDLPL
Ga0211577_1002233313	F098234	N/A	MDKVQLENRIKELTVLIEEASSNVKNLVDEQAAFTKRLDDLNKPKLSHAQMDEIQYIVESACETFDINVSECDLELELDYDNRVSVNHLDWSRCQEELTQRIMDRLEKVFAVAEDEE
Ga0211577_1002233314	F091012	N/A	MDNLWKRLKPAVKTKILADKDKYPYLVKDVKDQLKKHTFWTDLPIGTCRQVVNFSHESVYEVPLLDFMYGDLFIKKA
Ga0211577_1002233316	F106104	N/A	MTTNEIEKQLKRKAEEQISEEAQKIIDSLSIFSRDHTGVNRSGLHWYSKRVKPHKKYTSDPEPEDPFCHYDWSELAQLIRRNMEHNLLDQMVERKAKELLSKIDLLG
Ga0211577_100223333	F045797	N/A	MKLLRTVKEDSCIYLMEDFAGTVISTKWRPYKVGELPSRFGIIEDGSDKGGLYEWFNYKGYTYVRDER
Ga0211577_100223334	F068236	AGGA	MSETSDKKFTHDEVIQVAGEYLVCKETGKWVSATDVVNYENEWINIEIQQFYEKEQDKYY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211577_10022333

Overview

Ecosystem & Geography

Associated Families

Sequences