NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10054090

Scaffold Ga0211577_10054090


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10054090 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2913
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033251Metagenome178N
F067196Metagenome126N
F069345Metagenome / Metatranscriptome124N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_100540903F067196GAGGMPKFNNIEEKQKFFRNAIKKLDTGLPEEASPDLIKFFVIHVITAYDHDDCWDDIKGFVDFALKEKSQFDSARQAVEDADNLLDAITNSKDK
Ga0211577_100540906F033251GGAVRTVLVLVRLKPIRRMNVMADKKKRNLTSTKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKMSKIRLGVEAANNPVEDLTPFQKNLDETLFGGVSPDDKPRKPRKPRATKLSLTPKPLVTDTFNVPKKPVYAAVVLVLVIVAWYLGSMS
Ga0211577_100540907F069345GAGGMVWLMNLFAFGVCQMMIDCPECSHSDRKGEVEHEQFEMTSYGVYEPFGVWKTCENCSGSGEIEAD
Ga0211577_100540908F082525GAGGMEYKINSGVPIPDVVSGKKRGRGKWQVLLSSMSDGDCVDIPSGSYNSIYVAASRLGITLMSRREADGLADEFVRIWRVSDDD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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