NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10093590

Scaffold Ga0211577_10093590


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10093590 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F004614Metagenome431Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_100935901F004614N/ALSPKNQQKYIMLRTYSHHDHDIDDMDGEFWPMMGILFTIWGAWTGVVHLIDWLTVDAMVWWAEPLTIFPLVFLLIMKEKFDSLNPLHWWPMLFGYKIKLPEEDRVKIYPIDGADLMKKYGGPLHIHIVDYEHIKFRRKKDAVMYALRNF
Ga0211577_100935902F002602AGGMRNSNQIKALAVAIDEKDHIIKKLSAELGNLEVQNADYSQIVKELSDKLKLYENKYGTVFKPARNS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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