NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10397285

Scaffold Ga0211577_10397285


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10397285 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002334Metagenome569N
F099424Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_103972851F002334N/AVLICDGGKSFHRVAKKYNCLYVHKEDNLGYRDHTHESGIYGMTKGEVLEWLDRFRLACTLCNTDHILMMEDDILIRNEIHVPEDWEFAGQAKPGNILQEPFMEYLTLKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKENLCGNLGWVDVWMPMYYFLSGKRYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE
Ga0211577_103972852F099424AGGMSKITFGYIVGGEDKHYNNLLRSLESLERIEQPYEVVILDADSRLETDDDKPNVRIIPFPVDEAKGEGWFKPHYWQMRYH
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