NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211543_10020884

Scaffold Ga0211543_10020884


Overview

Basic Information
Taxon OID3300020470 Open in IMG/M
Scaffold IDGa0211543_10020884 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3671
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030245Metagenome186Y
F084850Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211543_100208843F030245GAGMLLFLLSTALAEPLMIHLKEGETAPFDGRLMNDEAVANIIAGREMSVEQCEIQKELAISLTKADLQLQIDYLKAELETETEKNLTLLTLRDTEIESLRKELRPNKTMWAFFGGFLLATGTSLGTYYAVREIDANN
Ga0211543_100208844F084850AGGMAITWAKIKLWCFHNWRFLVIGGAILLAYLLGGKKVKALQTQLQMSKELYKKEVEAIDNASDKKTELQTQANDKYKRALDIAHKTAMESNDHIELVKAERVRRLVEENKENPDEIDRILSKEFGIILLEPRDKS
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Institute for Fundamental Biomedical Research
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