Scaffold Ga0211543_10566205

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211543_10566205

Scaffold Ga0211543_10566205

Overview

Basic Information
Taxon OID	3300020470 Open in IMG/M
Scaffold ID	Ga0211543_10566205 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	536
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5375	Long. (^o)	70.0244	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021783	Metagenome / Metatranscriptome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_105662051	F021783	N/A	DPDFNDSTTEHFTSNTRDLTLKRAISLKFRSGGNNITIRGSTNTYGYAYCGPTFNTLNRFGLSHFTGSGGRAVVSATGGASDSTVTTSISPLRIDNLADFRLTGTYNTSLDGEVVQFRDITTDRLKTNLALPTEITEKDL

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