NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211579_10002639

Scaffold Ga0211579_10002639


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10002639 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13491
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004439Metagenome438Y
F004881Metagenome / Metatranscriptome420Y
F034603Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000263913F004881GAGGMLYKECTNPNDPDDRSLCIAVMDNSPFDGAIVRYTAFKLIEQELTGNDIACQYEYEFEVPPHDLGHEISDEEGQAFEERLGEWVIEIIQRQMEKHAAKDRDLNT
Ga0211579_100026394F034603N/AMKSFRGYLQERAPAWTESLSTALFDLTRTDIMIPLSPSIMKRIWPKLPRTTVFHLTDYAGVSRLKRMQGGKRSISAFWNIEPIVLQDGIRTDGGYVVELEGDILAAGPDDIMSQPDKTGRRWLTLSTLLDPVDQHGMGGGSKLKGIRNDIEEMMIEIIMKYSDDPQHMPNAKRAWIALGKEYGSRDKVDKKIKGQIIGDYIDGMERVMKKNSKQLQSVLLDYSKKRIQDEDPDSGEKPQWDEVVVNNFKIQKIHVGEEFSSDFAEDDDIYGFPFELYHDNKELVKYIQGKTKSLKI
Ga0211579_100026398F004439GGAMKSFRGYLIERGSSLSDLIFLPRITEYNRLMIPISSSMYKRIWPETLRATVFHTTDAKGVKKIAKLQGKKSQISAFFEMQSRYMEIGVATQGGVHSVLEMDADVLLSAKGDVMSHLDKSGRRWTSIADLQETSRYTNFGKVLRDIEKMFSALVPKYLTRGEFQDYSTIFQIWAMAKRKVDSKTMSLIIKDYMDGMEKVIKDNIKTFEDVMLSYAKKRTTDYSWDEQVVNNIKVKTAHFFKLKLKDGENSLTPEQDELIEFAESKGWKTKMWDAPIELEAHTRQVAKKELGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.