NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10007678

Scaffold Ga0211579_10007678


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10007678 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7475
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029900Metagenome / Metatranscriptome187Y
F057436Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211579_100076781F057436N/AMARVNYETLGKLIDVDEKDLEFERVTNSIDVVDIEYGVEVIFDYYRRHGF
Ga0211579_100076789F029900AGGAGMKRLLLILGMVSVLTAQTATMSNNIIGYTTINEKHDPDGAEDRNGDEYESTISFEKPYLWSFIKSDDKSWMASIFVDAPWARGSVYVEELFYKPYSDKFTIGLGRQAIPFGSNVPYLDLTRGDKFTYQTPTPNDVGLLYFGDGVSVYGGVGNWFIETYHGNDIENGFEEYTAGRVSYEFGDHFVGVSVDNENRQALDVSGYSEFVDYVTEFREDYQWGRAVVRLPNMWHLKGLGLIAGLERTEDETQALYGVTWSYGENRFLSTELSGDGDLKVKLYYGFNLKIGKENE
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