NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10013505

Scaffold Ga0211579_10013505


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10013505 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5457
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079939Metagenome115N
F093730Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_100135054F093730AGGAGGMTVYVRCEDDGRWRLWVRSVAGESPAGTRLNRGGLFPYETLYDHQDHAEATLQAGRLQEYIDDRNRVLMTNRKRKQRWQ
Ga0211579_100135056F079939GGAMIDRLEQQCVDIILDNHPGDEWVYTNGQFSELDGMFVRGGVIKAVAEIKTRECVLGYHPREMVGWNKLEAGRWASKSFRCPFYLFSYHPKSEVVAGYKLTDEVGNFIRKFEVSDYGQNKNKNERDTKTIRKTCWVENKDPSLLKRRGLRCIY
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