NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10003968

Scaffold Ga0211625_10003968


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10003968 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13584
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002721Metagenome / Metatranscriptome534Y

Sequences

Protein IDFamilyRBSSequence
Ga0211625_100039685F002721N/AMTKDSRLDLGRYVSNPFNKRGQIPKRLDFNELFVSKAKEGEYPWNPSRFGSSDLLKRSQTRKMTLNPDLNFVGNSPFFDPDGVQMAPNDYEMFEGLGRFKRPFDYDFEEGRARTNHRPQTQPDFNPEWMEAYRLSPTLNPGEMSKNPMPRMRDPDPNGYLMAMAEQRAKSEFEDDPDISDLLARGNRVVSEQKAATEQKEGQETADKVESSPDKIEGAG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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