Scaffold Ga0211625_10012665

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211625_10012665

Scaffold Ga0211625_10012665

Overview

Basic Information
Taxon OID	3300020473 Open in IMG/M
Scaffold ID	Ga0211625_10012665 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6382
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (94.74%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_122
Coordinates	Lat. (^o)	-8.9632	Long. (^o)	-139.2276	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040869	Metagenome	161	N
F048634	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1001266511	F048634	GGA	MNTIEAVEETLEILSQLQLNGRVTMTNSDKVSQCIQQLHQIRFNLKMKENQNV
Ga0211625_1001266513	F040869	GAGG	MEMKVFDQVYSELTLLQQEDKDDLEIAEQSLMAAMVFTMTHAPSDLNGLCLISNTFNGILAEYTLKDIQLKGE

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