NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10014923

Scaffold Ga0211625_10014923


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10014923 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5720
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022899Metagenome212Y
F030779Metagenome / Metatranscriptome184Y
F051197Metagenome / Metatranscriptome144Y
F058203Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0211625_1001492314F058203GAGGMSCLHNEALLETLFEEVLAEYPHLDEEACESIAKARFEDYSN
Ga0211625_100149235F022899AGGAGGMEQMYTRHGRSPVSSKHLEALNRLYDAYNQPDNSEGDRRFYWAKIQQLTNSLTE
Ga0211625_100149237F051197GGAGGMKSMTKYEWSEEFYKELVIDYNYRFPKFMEISYPNHSEESIND
Ga0211625_100149239F030779GGAGGMQIQSQKGSMVLDYYPTKTWDSVKLHDKVLKVLTFRGQTIIKKVISTQDYINEVYDRIHNFKYVDNKVDHSNCYQFVSLKEG
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