NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10112606

Scaffold Ga0211625_10112606


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10112606 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1532
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium GWB1_59_5(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009463Metagenome / Metatranscriptome317Y
F013249Metagenome / Metatranscriptome273Y
F054843Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0211625_101126062F009463N/AMEKVKLTDILEEDYTKDVNITNDTSMYDPLFEDQEGTLKYTTNINGRRYKVSFDVNKNPTKKGIKVKFFPLTDEGDEIPNPPEELLAQLQNDVATKLVPKFNDFRLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK
Ga0211625_101126063F013249N/AMGKRKLLNLKVVGHSPKLLNEFINDNKSNIFRETFSGIKHAIRQNKDTAEICSVNTDIAIATIAKKDWESALSSSLGYFESMDQYEMCGDINYTLKLLRNARSTKQSKKISGSATTS
Ga0211625_101126064F054843N/AMPDPLNNLKRSLDQLLQADTSIKRKNKKIYDQKKELFINLINQFETSITRSYLMEKDFKVDLS
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