NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211547_10007796

Scaffold Ga0211547_10007796


Overview

Basic Information
Taxon OID3300020474 Open in IMG/M
Scaffold IDGa0211547_10007796 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6318
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_151
CoordinatesLat. (o)36.139Long. (o)-28.9598Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067098Metagenome / Metatranscriptome126Y
F069326Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211547_100077961F069326N/AVTQVLLDPSDFPRKSTPDGNGKMPDYSFLGTVRARFVESQDTGDEIDDYIKPLSPHMVAYPLIGEVVNIAKHGNQMYYYQPLNMRNHVNMNVANNVPTDPKVTAQTTEHNRNLLSEYGDVVINGRFGNGIKFGSDPFYQYPDIKITNRQSVPPQKIQDEHYPHLQNINADGSSIFITSGPAREVDALIPAAFNLTTPEVLDGDMITLNSDRLVFNSKKTDIHMFAKRNLNLSANEEINLELGLNAFGGRISLGDAESTNPMVLGNQLEDLFEKLFSSLQSFSNSTSAATGVAEIADAGEVLKKDIEDISINMLPQILSDTVYITENQSNELTSINEVEGDVEPIVEVAGVRG
Ga0211547_100077967F067098GAGMPYTQEELQKLDFYKRLTEEDEQQYLQNKEVLTRKAETSGSANQGSLIRDSLNKILLFENPYKNELLEDESSKIVYDLKVKTLKTKQSDTIVEEILDRRFREL
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Institute for Fundamental Biomedical Research
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