Scaffold Ga0211547_10202903

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211547_10202903

Scaffold Ga0211547_10202903

Overview

Basic Information
Taxon OID	3300020474 Open in IMG/M
Scaffold ID	Ga0211547_10202903 Open in IMG/M
Source Dataset Name	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1018
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_151
Coordinates	Lat. (^o)	36.139	Long. (^o)	-28.9598	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211547_102029032	F039679	GGAG	MSVENSHLTIREDLVEEGLSVPVCFLDYKEDVHVEDTSTLNIDCDYCTDGEELNDWGANIIVKITDPSQKDKYGNSWKDRLAFAISADFDWN

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