Scaffold Ga0211541_10530444

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211541_10530444

Scaffold Ga0211541_10530444

Overview

Basic Information
Taxon OID	3300020475 Open in IMG/M
Scaffold ID	Ga0211541_10530444 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	574
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_152
Coordinates	Lat. (^o)	43.7738	Long. (^o)	-16.9097	Alt. (m)		Depth (m)	5 to 160
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017760	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211541_105304441	F017760	GGAG	MIENTLFNIPMWSIPCINFKKKKPQLEKLCKAFPEKKHGMQTFSTNRQRDRSGFAAAFNNIMSEELGMLSQKLK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.