NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211715_10152738

Scaffold Ga0211715_10152738


Overview

Basic Information
Taxon OID3300020476 Open in IMG/M
Scaffold IDGa0211715_10152738 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1125
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_148b
CoordinatesLat. (o)33.9044Long. (o)-56.7834Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F025857Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0211715_101527382F002874GAGMREIIEIDLSLNRSLEELESSYWEFIEVTEGEDSSMWSKSTQEDFSALEGYLMRQDRL
Ga0211715_101527384F025857GGAMTLHKIAPGCTFEPEEEVVMNPVIGRKKSVIEKTPEPYYRISELDKIEDNFAERMKKFKRIESRTEEREVKTPDGFAVSIAYNKSGYQLIPKEDL

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