Scaffold Ga0211585_10041756

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211585_10041756

Scaffold Ga0211585_10041756

Overview

Basic Information
Taxon OID	3300020477 Open in IMG/M
Scaffold ID	Ga0211585_10041756 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3474
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.9103	Long. (^o)	-142.5767	Alt. (m)		Depth (m)	140
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F059862	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_100417562	F059862	GAG	MFGIEKQLDRIVETLALSALARISPSKKVEKRLKEIAFPLEIEL
Ga0211585_100417565	F001227	AGGAG	MAPRARKRKTTKRKRTFSVNLIETGAGLAFLDASNAGAAAQQMVKGDISGGLKTLSGAFKSNKDQMVRIGAGALAAKLVVSSLGGSKILGAIGPLKLRA

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