NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10049419

Scaffold Ga0211585_10049419


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10049419 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3116
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077170Metagenome / Metatranscriptome117Y
F103073Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211585_100494193F077170AGGAVVSQDTSQWLAKKQGRVKQILGNGIAELNLEVPAGAEKVTVYDQTDGSELVVPKYTADRLVNEPLKIMVVNKDGSFASRTDLTRKHFAWTPPPEIESSVGSAAETVSKISGKKRKRGKRGRK
Ga0211585_100494197F103073GGAMADSKNHFVKKQDETVVEVDVPGKDLKVLIPDNRYAYGDNESVAQMAQDVVGKHSDDEGARGAYEQAREQLETTDFKTLRREEAIRRVNAKKPKFTVVPDEDDFGVLKGMRVFTILNHPSGLQEMKEVYYTVDQLADAVGE
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