NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10114415

Scaffold Ga0211585_10114415


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10114415 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1819
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051452Metagenome144Y
F076484Metagenome118Y
F083236Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211585_101144154F083236N/AMVIHIGDLVRLSGKTRHGKNRIREHGDLAEVCHIDGVLNAIHKFCVIHKHGDSWRWIDLPNDEHMNWEMVEKNDKCHFDNFQ
Ga0211585_101144155F051452GGAGMHNDVKTKLIRNGMNRAMSSKGKTFIWNPKSKFHVKRKIKEVRLTFGGNVELTFFHPLPSKRSRLFTIVPTWECMEDFCIVE
Ga0211585_101144156F076484GAGMDIELIGWFDASMSDEEIVDFIEELEAEEEARIELADMARDGWR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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