NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211503_10001114

Scaffold Ga0211503_10001114


Overview

Basic Information
Taxon OID3300020478 Open in IMG/M
Scaffold IDGa0211503_10001114 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24141
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (65.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F043442Metagenome156Y
F077769Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211503_1000111413F077769N/AMGSKIKAKYDGSCKICGSVWNVGDDLYYQKQPRATCSEEECFKQQGGTVKEYVVRKDDVIITRIPEIDVQDSVKQVADTLQQYIVVAHHLTKSLYPELDINTHTFGQIRSKVIDQLLYCTDIQKQ
Ga0211503_100011145F043442AGGAGMIIYFNGNNKAHMEALQDCKVKNVVLSFKYSYANITKFRDKFDKIFVVAGTKTEPERYYELLKKHRELYDYATQFDVFYKMDETLKHLENERKMGIDWTLPVLQENYLHHLSRLKLEPDSYVCLGEVKGRHDTEDQIRKLPSNIKFHGLAKGRYMNYNSPNFYSFDTSGWISAAMTKKCEVWNNRSTNFMFFGEKGKSMIPMLNHACEVHKEYLDIVGLKKQDVIDGDYNALLKIPFALLYLPMCKQLGILKENFNL
Ga0211503_100011146F001066N/AMLYMADEEIFKIKPLDKNATKVVVNGQKTVSPFNSAKHLKTANIPALCDQCVYRSIEDGGNGKCPKYEKGALCAIRKDFIEMINQLDTRDPEAVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEINTLLKIISTIGEISNKIVVSEEKRYDKKGDIESIFRQIKAQKTGD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.