NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208201_101150

Scaffold Ga0208201_101150


Overview

Basic Information
Taxon OID3300020480 Open in IMG/M
Scaffold IDGa0208201_101150 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2416
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013886Metagenome / Metatranscriptome267N
F044443Metagenome / Metatranscriptome154N
F090299Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208201_1011502F044443N/AMLNRIIEQFKYKLYTALDYLTVVSFMYLIIASLVFAFRHPWATDMERFIHIGDALMFNKISYKEMREEYEKR
Ga0208201_1011507F013886N/AMNNQDKPNAFAFKAKVGESKEIQLCICIRENDKWLENEIFSIPEGHPELSPYIDEQLFNIVFIGYERDENKEGFWIKHQNSFYMKSDTILTEDLLNNGEFFTTIEKGYQSFYEQSITSEREGEQTSSSEQENL
Ga0208201_1011508F090299AGGMKKVIVSKVEYEFLVSLLEELYIISPDETISDKWISKLEPTKKLFDLELEFYNIRNDGQTPTKKEMVKWLLEKIKNKNLDL
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