NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208201_101283

Scaffold Ga0208201_101283


Overview

Basic Information
Taxon OID3300020480 Open in IMG/M
Scaffold IDGa0208201_101283 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065483Metagenome / Metatranscriptome127N
F093758Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208201_1012832F065483GGAMIKSLNRDDVQVTPFVAKKLWNPTNIEATDLILWMSGSLSGSISHIYIDYGDGTSLPTTNSYCDLALQQQSDDFVQYHRGLNITGTFFPVGNQYYNSSSNPTNTDGTYMRLVYNTNKQLFYNTYNNPVQLWGVENFNLNTTYRLLTDVMDVFTIPRIKFGEKISPYSVTIIDDQDDANYIIVDDGNENLILSGSYFSTYQEIEFTDI
Ga0208201_1012833F093758N/AMIDPIYKLKTGYSIAADGDYVAVGNPTSFLSGSFVLNNKGSVEIFKYSKTTDLYNPNFIFYKYINPDDFPGYLSADTSSLDTTYINADTSSVPVLGLNIEIDLGGWNPIIYDDSYGVSVDVSGSVVVIGNPYYRFSLITGSIVYTGSCVDIYDLSDYSSSYVSGTIYYPKYSITNSFDNLEYSTFGESVSIYENKLVIGSSKNNCAYIYTQSLGV
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