NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208201_113633

Scaffold Ga0208201_113633


Overview

Basic Information
Taxon OID3300020480 Open in IMG/M
Scaffold IDGa0208201_113633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)572
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023329Metagenome / Metatranscriptome210N
F031460Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0208201_1136332F031460AGAAGMAKVINEVELHLQMWSTVTLSAEEIQDIYPEFADMVDFDDTDELEQAIQDHMDMNYLDHIQYADGALDECRIDFQYEDDGSE
Ga0208201_1136333F023329N/AKETQDKDKELEQLHAFFKYNIPTDEILSGRLKILLADLSWRMDLPTWTKEELDVMCARMDALVEVSNLLYDIQWHRLNWERAQTKLTEWKEEQNG

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