NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208051_100109

Scaffold Ga0208051_100109


Overview

Basic Information
Taxon OID3300020488 Open in IMG/M
Scaffold IDGa0208051_100109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9920
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004314Metagenome / Metatranscriptome444Y
F015704Metagenome / Metatranscriptome252Y
F027748Metagenome / Metatranscriptome193Y
F029368Metagenome / Metatranscriptome188Y
F085368Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0208051_1001091F004314N/AMYDDYDLDYTFSNDYGQDLDEYYAQDALDLDEDYARDGQDYESLAYRHYA
Ga0208051_10010918F027748N/AMTYAQITASELSASEARVAIFDLADDFSWETVAREMISRMSGDEAREFVEDFISLYAD
Ga0208051_10010920F029368N/AMRYNPATDRALSIDEIAAQCRAAILKADERRYVDQVADRIYDEILTTARWEDDLLIAA
Ga0208051_10010925F015704N/AMNATFSDILWNCTDPSNGTIPWSTACQAAKEHGLWDDFRTDYGVTARFGPVDTGEFLVWLGY
Ga0208051_10010926F085368AGCAGMTIFPLAMCSDLETRQIKWISRADQLKNGSRPSSYIHWGLPATTIAAQYAEAHADEGRGVQWR
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