NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208051_104378

Scaffold Ga0208051_104378


Overview

Basic Information
Taxon OID3300020488 Open in IMG/M
Scaffold IDGa0208051_104378 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1443
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019447Metagenome229N
F053294Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0208051_1043782F019447N/AMKTIPKEKLVQGLKILYKLWNREHDTDSDWPSRHNIEWESGVPYDFFTKYSKQLGLGNDADDYYYWMNALEENEDDLDNETLTVDNVIVPKYYTFDVETYEDRVEQVHVIYEGQVEGYFNEDQLSRSFYELGQGEVFDFYDFRETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLF
Ga0208051_1043784F053294N/ALDMKNFFMKLMGDGSDVSSKRFSGIITLINLIGLAYVATIKSGVTPEYMYDTLALLCGSFLGLTTLEAIFAKKKNPEPKKDGE
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