NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208052_101140

Scaffold Ga0208052_101140


Overview

Basic Information
Taxon OID3300020490 Open in IMG/M
Scaffold IDGa0208052_101140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2347
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F043404Metagenome156Y
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208052_1011402F081267AGGAGMSYEYHWVVVYDEDWGAFMVDVETTLLNLSEHPGVIYNKTTGRWEFAEEGSELEAEYQRLEEILAYNLTRLDLTAEIG
Ga0208052_1011406F016662GGAGMTYLVATTEVIYSEEALIKMMLATGEYGIHGHPISHEAMIEFVKDQEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNRLEIV
Ga0208052_1011407F043404GAGGMIDTTDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEVVEIRIGSKK
Ga0208052_1011409F008496AGGAGVEFTTSEPTFGIPATITPMTDQVAVTPAYDPKATILVRKGYYYGSPSDAKYDLENADDISRTYWRVDALQSTNSSNSRAQDKLKEYLVENYDEIGEEHATEIANIFGIDLSKTVDVEFSVTIKATISVPMNTDVSDLSVYDFDVEISSSEYEIDEYDADIDSIDERY
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