Scaffold Ga0208052_105040

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208052_105040

Scaffold Ga0208052_105040

Overview

Basic Information
Taxon OID	3300020490 Open in IMG/M
Scaffold ID	Ga0208052_105040 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1147
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208052_1050401	F007525	AGGA	MNLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEVERGGEMHLTLPELVNGELTDECATIVRYSDDLEAEGINDDIQLLQFIKTISNSGFEIYRMNPWWEVFAHNEDMGEIYDTFYEAVDAGIDHILDDRNW
Ga0208052_1050402	F081267	AGGA	MSYEYHWVVVYDEDWGAFMVDAETTELNFGEVHGAAYNKTSGRWEDVKDDLGVETEYLRLEELLAWNLTRLDLSKKTV

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