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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020494 Open in IMG/M |
| Scaffold ID | Ga0208326_100011 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9440 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (93.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F009530 | Metagenome / Metatranscriptome | 316 | Y |
| F043940 | Metagenome / Metatranscriptome | 155 | Y |
| F087194 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208326_10001113 | F000447 | GAGG | MGYIEIFRIDQNGAGWVDLSEATPDELFNIEVGLLNEGALFTTPEAD |
| Ga0208326_10001122 | F043940 | AGG | MKNRFRVEIYDANKLNDLTIYSEQGVDKEYLTELAFSNRRNFFGDVRAYVYDTLKKTKTTALYLPSEVINYGRTNKLTRDELGL |
| Ga0208326_10001125 | F000980 | GGA | MSVAWCIILFMTNELISSKYTFACDPEHCDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPTTTEEVKMETTEHLVPDTYNSNLLVTYKKINGYSNPEYITDKVTSIEWDLHNARQSQKTLNSIQSKIDAVKEIICEAYADSQDQDTLRDIAEALGIELIKEVQFTASVEVTGTYSYDVLSDYSEYDLESVITDSLYAESNDGNITIDDTEVCNVREA |
| Ga0208326_10001129 | F001125 | GGCGG | MGDRANFGFKDQKGDTIFLYGHWAGHDMLAKLANAVSAAETRWQDPSYATRIAISHLIGEDWNQTLSWGLYVNQLGDNEHKVPVINWASQTFTLYEEDMSTVVFSLSLAAFVDKYSRLVM |
| Ga0208326_1000113 | F087194 | AGAAGG | MNLDEYKQMVEAQRLASLAIALEALTKSEAIAKEMNK |
| Ga0208326_1000115 | F009530 | GGAG | MTITYSIWQGSKLISIDNVAHDVKAIDNLIKTLNDSELGKGKKFTANVQNIKVTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |