NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208326_100044

Scaffold Ga0208326_100044


Overview

Basic Information
Taxon OID3300020494 Open in IMG/M
Scaffold IDGa0208326_100044 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6712
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F008814Metagenome / Metatranscriptome327Y
F040629Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0208326_10004416F008814AGGMDNKLTVLEEIIKDIGEELYQKWYNALAIEDRTEEASKAMSSNAGETAIWVIQKFMDKFNQAADELKGE
Ga0208326_1000444F040629N/AMNKYLIKLVIAAEVEAFDENDARDYISDIFGIDDEVRKVNIESVKLIKEKK
Ga0208326_1000448F000473N/AMSNVYDNHHFKHGMNQWTGEPNKPVFYNEEMKKKLRELNKPMFLLMDVVKYPEFLALRLYEDNFIQFDGIEKEKVIDYVSKAKKLLESYGVRVELEGRPIA
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