NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208720_1024165

Scaffold Ga0208720_1024165


Overview

Basic Information
Taxon OID3300020495 Open in IMG/M
Scaffold IDGa0208720_1024165 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)674
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024729Metagenome / Metatranscriptome204Y
F075747Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208720_10241651F024729N/ANINLCFTNEKRKEINYIKMKEVFRKKHRKGLKLDALSYDERSQAVILNKGVPIICKVNNEEMGFINNQRFKIKKLGVFTITIEDDKGNKKEINHNDFQKYFLVAYGCTVHSAQGMSIGESYTIHEWDRMDQRLRYVALSRSRSLEYIHIMK
Ga0208720_10241652F075747N/AMDIENITLNEDLTLKPLPPKIVHCNACKTNFISRLKMNAEFYKTCEDCRHKIRLQNRRF
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