NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208230_1000022

Scaffold Ga0208230_1000022


Overview

Basic Information
Taxon OID3300020496 Open in IMG/M
Scaffold IDGa0208230_1000022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27222
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (19.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035632Metagenome / Metatranscriptome171Y
F088308Metagenome109N
F095001Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208230_100002235F088308N/AMKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHAMKTGVWVYNEDLK
Ga0208230_100002240F095001AGGMKVKIDMKGKYGTYFTQVKEFKDNNHLENWLKWMYSNQDRVKVIGTTNL
Ga0208230_10000225F035632N/AMEKFLSIPVTNEQNQLLSATGIVLIVQASTTTVTVHYKASTGTDVVTITHAAAASGNESMRDAIQSAVVSALGTSWTNVAFQVENLPFAVSGITIA
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