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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020498 Open in IMG/M |
| Scaffold ID | Ga0208050_1000059 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31475 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (17.02%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004474 | Metagenome / Metatranscriptome | 436 | Y |
| F032999 | Metagenome | 178 | Y |
| F057881 | Metagenome | 135 | N |
| F065712 | Metagenome | 127 | Y |
| F066704 | Metagenome | 126 | N |
| F080976 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208050_100005911 | F080976 | N/A | MKKKPGRPKKDLNINIDTKNVDIKITRKDGVTDVKVDTPKVDVDFHKDSEGKSLKIDTEKVDVSIDKGEVKLDVNEQSGLIGKIAKFLVKRFRK |
| Ga0208050_100005913 | F032999 | N/A | MSTAHYEYWWRRSGNFNLDLFNNYLRAKRDAEFQSNLQSKGCQVDNPTENNSSQQSRGCNQEDGHVASVNFKS |
| Ga0208050_100005925 | F066704 | N/A | VEFWQHEAYVIAEKVTGGNPIYRDLVSHVYLLVYDIDIPSKDLPRLFARYAYNQYNWRDSQFNKQYRLNDPLPELDNRETDQEYQETEIQLLLDSYMHQSPTDDQELFTKEITKMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLFITYNYSNRDCKSSYELQSP |
| Ga0208050_100005929 | F065712 | N/A | MIQAHISESLAGLDKGLIEKFNLIPYESCLPETVFMGMYREEDLVLLAAHIGASTIVWFGSDAKDLPDDWIKFVKGSVNIAVSHQVQETLEAKGVEAIWCPINAVIPHEWPVVPNGDKIFWYSGNAPEYYGESLINEIKERINIPIIRAGHDTFTKEQLVDVYSQCFLNLRLTPHDGCPNVNIEMGLMGRRSIYNGDLPASIPWQSVDDICQSIMREYLSRNVDNAYISNIYHNFVNYERMSTLFI |
| Ga0208050_100005933 | F057881 | GAG | MKQLQINLPTSLENCTPEQMTRWLMMAEAMKDNKDDITQFLIFQCQLLSLFSGESISKIKRADVDSIQEASSHMLKLLTSYHYQEPKEYITIQGQEYRFEKTFGHVSTGQIIDLKLIEDISQDPCQALAIMYVERGMEYYQEDDRGRVLNPNEKRYKVFKEHFPGDEFLNFFSFFLDLSEKRKLAILGIQMARQRMEMMKIEQDLKIQNGLIGPLSSIDYPKKWESVWTKLHNSLM |
| Ga0208050_10000595 | F004474 | N/A | MNYLLSVENLKKLGLIHNNTDTKLLAVAIKRSQDMHIQPALGTPLFKALLTRVETNTWTPDYLTLMNDYVVPCLVAFVDYRAALLLTEKMTNKATGRVSDENLQANTLTDVHEFRDQLRKDAYFYKERLVGFLMDDQATKYPEYCDMCSDHCNEYVKKDKTGYKPLNWIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |