NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000170

Scaffold Ga0208050_1000170


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12726
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009141Metagenome / Metatranscriptome322Y
F014614Metagenome / Metatranscriptome261Y
F021513Metagenome / Metatranscriptome218Y
F055671Metagenome138Y
F090297Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100017017F090297N/AMYEPFQAKVANTDLSPWYYAVGWARHSLQLQITRYKGLGLNTNYEEKQVAQLLELEQFLKMSWDQWMESLLPGETAQEVK
Ga0208050_100017019F014614N/AMTDWYADYYRQSRGYNDNDLRELRSVPRKPSTEVPDVFKHRFADPAEYDAWVEERRRAYF
Ga0208050_100017020F009141N/AMVPFYRSYLLGGKLVYLDKLSELSDSELNMLNIETMASLEEARRDYDAIENKQSEEGGSVYRRLKVAGYFQAAIKLELQN
Ga0208050_100017021F021513N/AMSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKIVRATSVQKAQSQSKTRKSSRKGKRGVAVLNEGQVLEIKRQIASGGKSVAKIARDFGVHVTTINCIKSGKTWKHVALQQPTPVVVAD
Ga0208050_10001703F055671N/AMTDRLLTLAALLTACAVFAMGADNAQRLERCESAGRTTAECRLLVLGR
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