NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000202

Scaffold Ga0208050_1000202


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000202 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11117
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015072Metagenome257Y
F022866Metagenome212Y
F033002Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100020212F033002AGGAGVPDALPDAYLEQCEQDARRFSGAYTGTSGTLAAHVMRLLADRERLAEELAVERARRQDA
Ga0208050_100020218F022866GGAGGMHRISNLMPALVLVRIGQELGTNSPAARAVHDLLELLSAVPWKILGSP
Ga0208050_100020219F015072AGGAGMNDPHHNEYLAAVAAMPEHTVSGGTTRLIDGQLVTTYAVGDRIRWTDKGRTLAGVVVEVLTHDTYHVRRHVPDRGNLHYAVTADQIVPF
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