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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020498 Open in IMG/M |
| Scaffold ID | Ga0208050_1000366 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7531 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023345 | Metagenome / Metatranscriptome | 210 | N |
| F041040 | Metagenome / Metatranscriptome | 160 | N |
| F050320 | Metagenome / Metatranscriptome | 145 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208050_10003663 | F023345 | N/A | MSKTINENDLGDRMYTGQSFVQGGLGGASSLGTYSSPDVSQNPGSFKYAPSIAGSASDISTPPPEDYDNKSTYDPGQYEKDVQDIKYKVTPDEVLAGLQYELKKMVFKRKDLAKELVVRNLKEDNKYYSKLHMLNIDDDDKLPVKPSFMSPESKAEPYNLKATPQQEAVDYRTPQEKEIAKIIREMAQKKYEKRFPKA |
| Ga0208050_10003664 | F041040 | N/A | MLLKNRICILFLHYLNDDITIKHYELLKKYNPTKNIYPIGFENHNLIDGSHVVCKKESYPKNDILNKTCEKEYWSEADLLIYDFYLNYPNLPVYFVVEWDTYCNCSLENFYGNALNMNNFSHIIHKKESLKTWNWYKKLTKNQKLIPNIGGMTPTSGILFTKSVLSSMINLMINNPRQYDNMFSELRLGTLLQQSGYTLNKPFLNSESYINWNIDFITFDPSKFGYYHPIKTIV |
| Ga0208050_10003667 | F050320 | N/A | MNTKVILFSHHKVDDLTIERFNNVKKLNPSWDVIPIGFKGYELMEGSIVTNKEKYPSNKDIQYFVPQYHLDWFDPDLFLYEGYVQKSNYNEYFLYEYDTISNVSIESFFDTNVDFFGNNLCVPARENWEWVELYRKHNPYNSYFKTLYAYGQSTCIYFKNHILSKCVNEVFTNKHLYDGMLSEVRGGTLASQFTTLKKGRHNIEKHISWTHKDITIDLSKPYFYHPVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |