NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000770

Scaffold Ga0208050_1000770


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000770 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4785
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034044Metagenome175Y
F036230Metagenome / Metatranscriptome170Y
F096915Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100077011F034044GGAGGMTPDDITLMADASGLSFYGMGKDRDKFLHYLERFAKLVAAAEREACAKVCDARCIADGWEGCYADECAAAIRARGQA
Ga0208050_100077016F036230GGAGGMNVEISEIVQVNPAKEMFGGCMVVVTELKSWGIQGYVQSAGVPGQQYIRLKWEDIEPTGGKAVWVVGGVA
Ga0208050_10007708F096915AGGAGMNYLPQDFARCESNPLLEQCKQCARNMHINPVHPAAGRQMWIGPWTGHGPCPNGDFVEVKDE
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