Scaffold Ga0208050_1000960

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208050_1000960

Scaffold Ga0208050_1000960

Overview

Basic Information
Taxon OID	3300020498 Open in IMG/M
Scaffold ID	Ga0208050_1000960 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4183
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025976	Metagenome / Metatranscriptome	199	Y
F042183	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10009602	F025976	N/A	MKTYYEVYENAIVNHPITGARVRGNKQILTTKNREKALKLYRESERTRWVEEITTDSDGCETTDIITE
Ga0208050_10009607	F042183	GGA	MVVVTSNYLKKSDSAMIRKYSRFVLNRLVRPAIQKRSKITIKVLGEDEMKNEADALDLKAYKAWVTHDGLDEEGNKKFTVVLNHTRINKLGKKPQTRLKNLLIDLGHELVHVKQYLNNELFDYKSGDVRFKGLFFDASHYMDEE

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