NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1001215

Scaffold Ga0208050_1001215


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1001215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3688
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018350Metagenome / Metatranscriptome235Y
F074416Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10012152F018350GGAGGLDILSNMTFKDIINKYPIVNTDWECNHNHIIGSMSHRIMAVTGIDSYNGMKQFHQYLGITGYFSRIRKDDGSGVIFNRDPWMREFKMYYTRGGMKNGIYECTRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER
Ga0208050_10012153F074416N/ACGLTKDNVLYGKTVNLSKMYDNMLSDVREFLFGGEFVSMIDMVEYDINISKFVNAYISKKYGISIRCVYNKINGNTSRNATMSVDILYNELKVKYGITAIDWMYLYNNMNFHTNDVDILEYVANKILGNDFYNYFVTEYNIRTVGVVKKVHNSIKVEWNNGGSKEIHLSRFVKSYNRWWTMTTGKKDKNRGDIKDYDKLLNGRSVTEVFPVYCPVFSNLRMNYTGIDFDNGKNNIKKCSEIAGYSDKGETWSFASIDRIDSNKGYSYDNIRIISHYANHLKNVGNIEQMRRLVRYMDKQNSYF
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