NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1001593

Scaffold Ga0208050_1001593


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1001593 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3171
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005697Metagenome / Metatranscriptome392Y
F009503Metagenome / Metatranscriptome317Y
F014089Metagenome / Metatranscriptome266Y
F024931Metagenome204N
F025683Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10015932F025683GGAGMVLDLLDPQTLGRLVGIVVLMVMAGAAGYAKGFKEGKREGIARRKAMVRHMANKAVK
Ga0208050_10015933F005697AGGCGGMGFLDNYEASRERLERWLATYPKGRIETRIVEFNAEKGYVLVEAKAFRNDTDLHPAGIDYAYGYQGAYQQNMKRWFVEDTTTSAIMRCQQLVMGGAERSTREIMEQVERTPAKVANADSTDYWTTKFGDVPSYKTAAEAEQSGVPSLGSSMDEIAKQLGGQLVQEAPQCKHGHMVWKQAHEGAPKTWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV
Ga0208050_10015934F014089AGGMHAALVRLTINRKMGTPGMSEYMELINPQTMTCKLLKNGEVVAEYKVEQCDSCAKIMKLDAFGYKTGQAGEKLAWLCGGCR
Ga0208050_10015935F024931N/AMWWLSVKMQLTKEEEIICMLAAIKMTAESTKGTDNPQRFQKELGTFEYLVESAEAIGSEWVVAKYFDLPFNPYENKFKVKADVGNSIEVRWTKYVTGQLIIHEYDRPTDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSSYGQSAI
Ga0208050_10015936F009503AGGAMDKVQFECRMCKKKTSQIVVNITDLLPPGVETIQCTVCSCMTVAQIGTSNANL
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