NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1002090

Scaffold Ga0208050_1002090


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1002090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2720
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F016142Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10020903F001018N/AMTQITSTKLNELSVIKLYEHYNALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHTTERELYCVTEEITTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
Ga0208050_10020909F016142N/ATTSHAKLQAHWADKFIHLSDPVKLTTLLQSDQTDLGHLVAPDGFRFSNRPFDMDSELDDGKEQQQVLNEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFQKYRELLCKRTEIRNAAHSGVSDKCVAWWYAPPVDSNSDGRFVLLHTKSGAQAPLSHWRTYKPQEVLTQNDAWDLFFNMMEAGYIPFPGTSLPQLKEAVKKS
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